MetaBase™ (direct access to content for genomics, proteomics, metabolomics & more) for Systems Biology & Bioinformatics
MetaBase™ is the knowledge base behind MetaCore™ and MetaDrug™. Organized as an Oracle database with over 100 tables, MetaBase™ is, arguably, the most comprehensive manually curated database of mammalian biology and medicinal chemistry data available today, in both industry and academia. Overall, it contains over 6 million experimental findings on protein-protein, protein-DNA and protein-compound interactions. MetaBase™ also includes thousands of established signaling and metabolic pathways, ligand-receptor information for known drugs, drug targets and diseases, kinetic information on drug-metabolizing enzymes and relevant signaling proteins, ontologies for diseases, functional processes, toxicities, proteins and drugs. GeneGo offers access to MetaBase™ tables and schema to a select group of large life science companies for pursuits in genomics, metabolomics, proteomics and more. Customers can integrate MetaBase™ content with their internal system and edit the interaction information or MetaBase™ can be used as their central repository for experimental data, integrate their own databases and algorithms and distribute enterprise wide within the organization. MetaBase™ is installed behind the user’s firewall on a stand-alone server; no web access is available. The product is made available at GeneGo’s discretion.
MetaBase™ provides customers with direct access to MetaCore™ and MetaDrug™ content.
- It is the largest manually curated database of the human “interactome”.
- It is Oracle based and requires Oracle RDBMS 9.2 or higher.
- Easy installation and update
MetaBase™ contains data in the following categories:
Physical entities:
- Genes
- Proteins
- Chemical compounds
- Enzymes
Interaction data:
- Signaling and Metabolic networks
- Chemical reactions
Other data:
- Different organism’s orthologs for human genes
- Gene and protein mappings to public identifiers
- Protein hierarchy, complexes, families
- Synonyms Diseases and annotations
- Cellular processes Proprietary GeneGo processes
- Canonical pathways and maps
- Tissues and localizations
MetaBase enables research into proteomics, genomics, metabolomics and more through our manually curated database of mammalian biology and medicinal chemistry.